Baaden, M.: search on Z-Library

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1

Nothing to Sneeze at: A Full-Scale Computational Model of the Human Influenza Virion

Reddy, Tyler, Shorthouse, David, Parton, Daniel, Jefferys, Elizabeth, Fowler, Philip W., Chavent, Matthieu, Baaden, Marc, Sansom, Mark S.P.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 42 KB

english, 2015

2

Theoretical Studies on Lanthanide Cation Extraction by Picolinamides: Ligand–Cation Interactions and Interfacial Behavior

Baaden, M., Berny, F., Madic, C., Schurhammer, R., Wipff, G.

Journal:

Solvent Extraction and Ion Exchange

Year:

2003

Language:

english

File:

PDF, 1.60 MB

english, 2003

3

Three hydrolases and a transferase: Comparative analysis of active-site dynamics via the BioSimGrid database

Kaihsu Tai, Marc Baaden, Stuart Murdock, Bing Wu, Muan Hong Ng, Steven Johnston, Richard Boardman, Hans Fangohr, Katherine Cox, Jonathan W. Essex, Mark S.P. Sansom

Journal:

Journal of Molecular Graphics and Modelling

Year:

2007

Language:

english

File:

PDF, 545 KB

english, 2007

4

Controlling Redox Enzyme Orientation at Planar Electrodes

Hitaishi, Vivek, Clement, Romain, Bourassin, Nicolas, Baaden, Marc, de Poulpiquet, Anne, Sacquin-Mora, Sophie, Ciaccafava, Alexandre, Lojou, Elisabeth

Journal:

Year:

2018

Language:

english

File:

PDF, 6.42 MB

english, 2018

5

Coarse-grain modelling of protein–protein interactions

Baaden, Marc, Marrink, Siewert J

Journal:

Current Opinion in Structural Biology

Year:

2013

Language:

english

File:

PDF, 1.85 MB

english, 2013

6

New parameters for the gait analysis in the orthopaedic private practice

Wyss, Christian, Baaden,

Journal:

Year:

1994

Language:

english

File:

PDF, 129 KB

english, 1994

7

Post-War Saints: 1945–1960

Journal:

History of European Ideas

Year:

2014

Language:

english

File:

PDF, 231 KB

english, 2014

8

44 Predicting and exploring complex nucleic acids architectures through a coarse-grained model

Cragnolini, T., Doutreligne, S., Baaden, M., Derreumaux, P., Pasquali, S.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2015

Language:

english

File:

PDF, 556 KB

english, 2015

9

Visualization of Biomolecular Structures: State of the Art Revisited

Kozlíková, B., Krone, M., Falk, M., Lindow, N., Baaden, M., Baum, D., Viola, I., Parulek, J., Hege, H.-C.

Journal:

Computer Graphics Forum

Year:

2016

Language:

english

File:

PDF, 11.13 MB

english, 2016

10

Visual Analysis of Biomolecular Cavities: State of the Art

Krone, M., Kozlíková, B., Lindow, N., Baaden, M., Baum, D., Parulek, J., Hege, H.-C., Viola, I.

Journal:

Computer Graphics Forum

Year:

2016

Language:

english

File:

PDF, 1.53 MB

english, 2016

11

Electrostatically-driven fast association and perdeuteration allow detection of transferred cross-relaxation for G protein-coupled receptor ligands with equilibrium dissociation constants in the high-to-low nanomolar range

Laurent J. Catoire, Marjorie Damian, Marc Baaden, Éric Guittet, Jean-Louis Banères

Journal:

Journal of Biomolecular NMR

Year:

2011

Language:

english

File:

PDF, 2.93 MB

english, 2011

12

X-ray structures of general anaesthetics bound to a pentameric ligand-gated ion channel

Nury, Hugues, Van Renterghem, Catherine, Weng, Yun, Tran, Alphonso, Baaden, Marc, Dufresne, Virginie, Changeux, Jean-Pierre, Sonner, James M., Delarue, Marc, Corringer, Pierre-Jean

Journal:

Year:

2011

Language:

english

File:

PDF, 1.24 MB

english, 2011

13

Coarse-Grained Molecular Dynamics Simulations of the Entire Influenza Virus Envelope

Parton, Daniel L., Baaden, Marc, Sansom, Mark S.P.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 39 KB

english, 2011

14

Holding the nucleosome together: A quantitative description of the DNA-histone interface in solution

Elbahnsi, Ahmad, RETUREAU, Romain, Baaden, Marc, Hartmann, Brigitte, Oguey, Christophe

Journal:

Journal of Chemical Theory and Computation

Year:

2017

Language:

english

File:

PDF, 1.83 MB

english, 2017

15

Physics-based oligomeric models of the yeast mitofusin Fzo1 at the molecular scale in the context of membrane docking

Brandner, Astrid, De Vecchis, Dario, Baaden, Marc, Cohen, Mickael M., Taly, Antoine

Journal:

Year:

2019

Language:

english

File:

PDF, 15.36 MB

english, 2019

16

Molecular Dynamics Study of the Uranyl Extraction by Tri-n-butylphosphate (TBP): Demixing of Water/“Oil”/TBP Solutions with a Comparison of Supercritical CO2 and Chloroform

Baaden, Marc, Schurhammer, Rachel, Wipff, Georges

Journal:

Journal of Physical Chemistry B

Year:

2002

Language:

english

File:

PDF, 1.30 MB

english, 2002

17

Complexation of M 3+ Lanthanide Cations by Calix[4]arene-CMPO Ligands: A Molecular Dynamics Study in Methanol Solution and at a Water/Chloroform Interface

Troxler, L., Baaden, M., Böhmer, V., Wipff, G.

Journal:

Supramolecular Chemistry

Year:

2000

Language:

english

File:

PDF, 6.93 MB

english, 2000

18

Notice from the American Board of Thoracic Surgery

Tek, Alex, Bond, Peter J., Sansom, Mark S.P., Baaden, Marc

Journal:

The Annals of Thoracic Surgery

Year:

1986

Language:

english

File:

PDF, 209 KB

english, 1986

19

Extending the Structure of an ABC Transporter to Atomic Resolution: Modeling and Simulation Studies of MsbA †

Campbell, Jeff D., Biggin, Philip C., Baaden, Marc, Sansom, Mark S. P.

Journal:

Year:

2003

Language:

english

File:

PDF, 431 KB

english, 2003

20

Innovative interactive flexible docking method for multi-scale reconstruction elucidates dystrophin molecular assembly

Molza, A.-E., Férey, N., Czjzek, M., Le Rumeur, E., Hubert, J.-F., Tek, A., Laurent, B., Baaden, M., Delalande, O.

Journal:

Faraday Discussions

Year:

2014

Language:

english

File:

PDF, 876 KB

english, 2014

21

How Cations Can Assist DNase I in DNA Binding and Hydrolysis

Guéroult, Marc, Picot, Daniel, Abi-Ghanem, Joséphine, Hartmann, Brigitte, Baaden, Marc, Levitt, Michael

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 1.38 MB

english, 2010

22

Biomimetic water channels: general discussion

Baaden, Marc, Barboiu, Mihail, Bill, Roslyn M., Chen, Chun-Long, Davis, Jeffery, Di Vincenzo, Maria, Freger, Viatcheslav, Fröba, Michael, Gale, Philip A., Gong, Bing, Hélix-Nielsen, Claus, Hickey, Rob

Journal:

Faraday Discussions

Year:

2018

Language:

english

File:

PDF, 682 KB

english, 2018

23

Allosteric Transition and Pharmacological Modulation of Pentameric Channel-Receptors: The Case of General Anesthetics

Corringer, Pierre-Jean, Nury, Hugues, Van Renterghem, Catherine, Yeng, Yun, Tran, Alphonso, Baaden, Marc, Changeux, Jean-Pierre, Sonner, James M., Delarue, Marc

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 39 KB

english, 2012

24

A membrane-inserted structural model of the yeast mitofusin Fzo1

De Vecchis, Dario, Cavellini, Laetitia, Baaden, Marc, Hénin, Jérôme, Cohen, Mickaël M., Taly, Antoine

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 8.09 MB

english, 2017

25

Semantics for an Integrative and Immersive Pipeline Combining Visualization and Analysis of Molecular Data

Trellet, Mikael, Férey, Nicolas, Flotyński, Jakub, Baaden, Marc, Bourdot, Patrick

Journal:

Journal of Integrative Bioinformatics

Language:

english

File:

PDF, 2.89 MB

english

26

Structural basis for ion permeation mechanism in pentameric ligand-gated ion channels

Sauguet, Ludovic, Poitevin, Frédéric, Murail, Samuel, Van Renterghem, Catherine, Moraga-Cid, Gustavo, Malherbe, Laurie, Thompson, Andrew W, Koehl, Patrice, Corringer, Pierre-Jean, Baaden, Marc, Delaru

Journal:

The EMBO Journal

Year:

2013

Language:

english

File:

PDF, 2.82 MB

english, 2013

27

[IEEE 2015 IEEE 1st International Workshop on Virtual and Augmented Reality for Molecular Science (VARMS@IEEEVR) - Arles, France (2015.3.24-2015.3.24)] 2015 IEEE 1st International Workshop on Virtual and Augmented Reality for Molecular Science (VARMS@IEEEVR) - UnityMol: interactive and ludic visual manipulation of coarse-grained RNA and other biomolecules

Doutreligne, Sebastien, Gageat, Cedric, Cragnolini, Tristan, Taly, Antoine, Pasquali, Samuela, Derreumaux, Philippe, Baaden, Marc

Year:

2015

Language:

english

File:

PDF, 640 KB

english, 2015

28

Visualizing biological membrane organization and dynamics

Journal:

Journal of Molecular Biology

Year:

2019

Language:

english

File:

PDF, 30.50 MB

english, 2019

29

A Zoom on Membrane Fusion through Coarse-Grained, Atomistic and Hybrid Molecular Dynamics of SNARE Proteins

Tek, Alex, Darré, Leonardo, Bond, Peter J., Sansom, Mark S.P., Pantano, Sergio, Baaden, Marc

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 35 KB

english, 2013

30

The Molecular Recognition Mechanism for Superoxide Dismutase Presequence Binding to the Mitochondrial Protein Import Receptor Tom20 from Oryza sativa Involves an LRTLA Motif

Zhang, Yubo, Baaden, Marc, Yan, Junjie, Shao, Jinzhen, Qiu, Su, Wu, Yingliang, Ding, Yi

Journal:

Journal of Physical Chemistry B

Year:

2010

Language:

english

File:

PDF, 3.07 MB

english, 2010

31

Barrels & corks in a computer - modelling bacterial iron transport systems

Baaden, M., Sansom, M. S. P.

Journal:

Biochemical Society Transactions

Year:

2002

Language:

english

File:

PDF, 126 KB

english, 2002

32

Auswirkung einer mechanischen Vorbehandlung auf das anaerobe Abbauverhalten von feuchten organischen Feststoffen

R. Mundhenke, A. Baaden, J. Müller, J. Schwedes

Journal:

Chemie Ingenieur Technik

Year:

2002

Language:

german

File:

PDF, 195 KB

german, 2002

33

Announcement

Tek, Alex, Darré, Leonardo, Bond, Peter J., Sansom, Mark S.P., Pantano, Sergio, Baaden, Marc

Journal:

Clinical Neurology and Neurosurgery

Year:

1987

File:

PDF, 31 KB

1987

34

Molecular Dynamics Simulations of the Influenza Virus Envelope and Raft-Like Aggregates of Hemagglutinin

Parton, Daniel L., Tek, Alex, Baaden, Marc, S.P. Sansom, Mark

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 111 KB

english, 2012

35

Molecular simulations and visualization: introduction and overview

Hirst, Jonathan D., Glowacki, David R., Baaden, Marc

Journal:

Faraday Discussions

Year:

2014

Language:

english

File:

PDF, 210 KB

english, 2014

36

Molecular Graphics: Bridging Structural Biologists and Computer Scientists

Martinez, Xavier, Krone, Michael, Alharbi, Naif, Rose, Alexander S., Laramee, Robert S., O'Donoghue, Sean, Baaden, Marc, Chavent, Matthieu

Journal:

Year:

2019

File:

PDF, 1.86 MB

2019

37

Functional Modes and Residue Flexibility Control the Anisotropic Response of Guanylate Kinase to Mechanical Stress

Sacquin-Mora, Sophie, Delalande, Olivier, Baaden, Marc

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 699 KB

english, 2010

38

Microseconds Dynamics Simulations of the Outer-Membrane Protease T

Neri, Marilisa, Baaden, Marc, Carnevale, Vincenzo, Anselmi, Claudio, Maritan, Amos, Carloni, Paolo

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 453 KB

english, 2008

39

Oriented chiral water wires in artificial transmembrane channels

Kocsis, Istvan, Sorci, Mirco, Vanselous, Heather, Murail, Samuel, Sanders, Stephanie E., Licsandru, Erol, Legrand, Yves-Marie, van der Lee, Arie, Baaden, Marc, Petersen, Poul B., Belfort, Georges, Bar

Journal:

Science Advances

Year:

2018

Language:

english

File:

PDF, 2.52 MB

english, 2018

40

Molecular modelling as the spark for active learning approaches for interdisciplinary biology teaching

Taly, A., Nitti, F., Baaden, M., Pasquali, S.

Journal:

Interface Focus

Year:

2019

Language:

english

File:

PDF, 1.04 MB

english, 2019

41

A Molecular Perspective on Mitochondrial Membrane Fusion: From the Key Players to Oligomerization and Tethering of Mitofusin

De Vecchis, Dario, Brandner, Astrid, Baaden, Marc, Cohen, Mickael M., Taly, Antoine

Journal:

Journal of Membrane Biology

Year:

2019

Language:

english

File:

PDF, 4.07 MB

english, 2019

42

Interactive Molecular Dynamics: Scaling up to Large Systems

Dreher, Matthieu, Piuzzi, Marc, Turki, Ahmed, Chavent, Matthieu, Baaden, Marc, Férey, Nicolas, Limet, Sébastien, Raffin, Bruno, Robert, Sophie

Journal:

Procedia Computer Science

Year:

2013

Language:

english

File:

PDF, 5.37 MB

english, 2013

43

M 3+ Lanthanide Cation Solvation by Acetonitrile: The Role of Cation Size, Counterions, and Polarization Effects Investigated by Molecular Dynamics and Quantum Mechanical Simulations

Baaden, M., Berny, F., Madic, C., Wipff, G.

Journal:

Journal of Physical Chemistry A

Year:

2000

Language:

english

File:

PDF, 314 KB

english, 2000

44

The modelling and enhancement of water hydrodynamics: general discussion

Baaden, Marc, Borthakur, Manash Pratim, Casanova, Serena, Coalson, Rob, Freger, Viatcheslav, Gonzalez, Miguel, Góra, Artur, Hinds, Bruce, Hirunpinyopas, Wisit, Hummer, Gerhard, Kumar, Manish, Lynch, C

Journal:

Faraday Discussions

Year:

2018

Language:

english

File:

PDF, 669 KB

english, 2018

45

Auswirkungen einer mechanischen Vorbehandlung auf das anaerobe Abbauverhalten von organischen Feststoffen

R. Mundhenke, A. Baaden, J. Müller, J. Schwedes

Journal:

Chemie Ingenieur Technik

Year:

2002

Language:

german

File:

PDF, 56 KB

german, 2002

46

Structural dataset from microsecond-long simulations of yeast mitofusin Fzo1 in the context of membrane docking

Brandner, Astrid, De Vecchis, Dario, Baaden, Marc, Cohen, Mickael M., Taly, Antoine

Journal:

Year:

2019

Language:

english

File:

PDF, 349 KB

english, 2019

47

Visualizing biomolecular electrostatics in virtual reality with UnityMol‐APBS

Laureanti, Joseph, Brandi, Juan, Offor, Elvis, Engel, David, Rallo, Robert, Ginovska, Bojana, Martinez, Xavier, Baaden, Marc, Baker, Nathan A.

Journal:

Protein Science

Year:

2019

Language:

english

File:

PDF, 4.00 MB

english, 2019

48

Mechanische Beanspruchung von pflanzlichen organischen Materialien

A. Baaden, R. Mundhenke, J. A. Müller, J. Schwedes

Journal:

Chemie Ingenieur Technik

Year:

2003

Language:

german

File:

PDF, 76 KB

german, 2003

49

TBP at the Water−Oil Interface: The Effect of TBP Concentration and Water Acidity Investigated by Molecular Dynamics Simulations

Baaden, M., Burgard, M., Wipff, G.

Journal:

Journal of Physical Chemistry B

Year:

2001

Language:

english

File:

PDF, 731 KB

english, 2001

50

OmpT: Molecular Dynamics Simulations of an Outer Membrane Enzyme

Baaden, Marc, Sansom, Mark S.P.

Journal:

Biophysical Journal

Year:

2004

Language:

english

File:

PDF, 873 KB

english, 2004

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